OBO Foundry dashboard analysis¶

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/tmp/ipykernel_395/4293058459.py:21: FutureWarning:

The `inplace` parameter in pandas.Categorical.reorder_categories is deprecated and will be removed in a future version. Reordering categories will always return a new Categorical object.

Ontologies by number of axioms

Ontologies by number of classes

Ontologies by how many ontologies use it

Different serialisations used

OWL Functional Syntax    1
RDF/XML Syntax           1
Name: syntax, dtype: int64

Breakdown of used Axiom Types

count mean std min 25% 50% 75% max
AnnotationAssertion 2 3883.5 2256.377739 2288.0 3085.75 3883.5 4681.25 5479.0
Declaration 2 887.0 503.460028 531.0 709.00 887.0 1065.00 1243.0
SubPropertyChainOf 2 8.0 9.899495 1.0 4.50 8.0 11.50 15.0
SubClassOf 2 1110.5 837.921536 518.0 814.25 1110.5 1406.75 1703.0
TransitiveObjectProperty 2 8.0 1.414214 7.0 7.50 8.0 8.50 9.0
DataPropertyRange 1 12.0 16.970563 0.0 6.00 12.0 18.00 24.0
DataPropertyDomain 1 5.5 7.778175 0.0 2.75 5.5 8.25 11.0
SymmetricObjectProperty 1 3.0 4.242641 0.0 1.50 3.0 4.50 6.0
AnnotationPropertyRangeOf 1 1.5 2.121320 0.0 0.75 1.5 2.25 3.0
SubObjectPropertyOf 1 45.0 63.639610 0.0 22.50 45.0 67.50 90.0
SubDataPropertyOf 1 5.5 7.778175 0.0 2.75 5.5 8.25 11.0
ClassAssertion 1 10.0 14.142136 0.0 5.00 10.0 15.00 20.0
SubAnnotationPropertyOf 1 12.0 16.970563 0.0 6.00 12.0 18.00 24.0
Rule 1 2.0 2.828427 0.0 1.00 2.0 3.00 4.0
ObjectPropertyRange 1 43.5 61.518290 0.0 21.75 43.5 65.25 87.0
ObjectPropertyDomain 1 45.5 64.346717 0.0 22.75 45.5 68.25 91.0
ObjectPropertyAssertion 1 1.0 1.414214 0.0 0.50 1.0 1.50 2.0
IrrefexiveObjectProperty 1 0.5 0.707107 0.0 0.25 0.5 0.75 1.0
InverseObjectProperties 1 16.5 23.334524 0.0 8.25 16.5 24.75 33.0
AnnotationPropertyDomain 1 0.5 0.707107 0.0 0.25 0.5 0.75 1.0
FunctionalObjectProperty 1 2.5 3.535534 0.0 1.25 2.5 3.75 5.0
FunctionalDataProperty 1 3.0 4.242641 0.0 1.50 3.0 4.50 6.0
EquivalentObjectProperties 1 1.5 2.121320 0.0 0.75 1.5 2.25 3.0
EquivalentClasses 1 11.0 15.556349 0.0 5.50 11.0 16.50 22.0
DisjointClasses 1 21.0 29.698485 0.0 10.50 21.0 31.50 42.0
DifferentIndividuals 1 1.0 1.414214 0.0 0.50 1.0 1.50 2.0
InverseFunctionalObjectProperty 1 0.5 0.707107 0.0 0.25 0.5 0.75 1.0

Breakdown of used OWL Class Expression constructs

count mean std min 25% 50% 75% max
Class 2 3134.5 2267.691447 1531.0 2332.75 3134.5 3936.25 4738.0
ObjectSomeValuesFrom 2 340.0 463.862048 12.0 176.00 340.0 504.00 668.0
DataExactCardinality 1 3.0 4.242641 0.0 1.50 3.0 4.50 6.0
DataMinCardinality 1 0.5 0.707107 0.0 0.25 0.5 0.75 1.0
DataSomeValuesFrom 1 13.0 18.384776 0.0 6.50 13.0 19.50 26.0
ObjectAllValuesFrom 1 16.5 23.334524 0.0 8.25 16.5 24.75 33.0
ObjectComplementOf 1 15.0 21.213203 0.0 7.50 15.0 22.50 30.0
ObjectExactCardinality 1 0.5 0.707107 0.0 0.25 0.5 0.75 1.0
ObjectIntersectionOf 1 14.0 19.798990 0.0 7.00 14.0 21.00 28.0
ObjectMaxCardinality 1 0.5 0.707107 0.0 0.25 0.5 0.75 1.0
ObjectMinCardinality 1 0.5 0.707107 0.0 0.25 0.5 0.75 1.0
ObjectOneOf 1 1.5 2.121320 0.0 0.75 1.5 2.25 3.0
ObjectUnionOf 1 21.0 29.698485 0.0 10.50 21.0 31.50 42.0

OBO Score (Experimental)

ontology score score_dash score_impact
0 mcro 0.412 0.824 0.0
1 vario 0.155 0.311 0.0

OBO Score Summary

count mean std min 25% 50% 75% max
score 2.0 0.2835 0.181726 0.155 0.21925 0.2835 0.34775 0.412
score_dash 2.0 0.5675 0.362746 0.311 0.43925 0.5675 0.69575 0.824
score_impact 2.0 0.0000 0.000000 0.000 0.00000 0.0000 0.00000 0.000

OBO dependency graph